I build AI tools that accelerate biological research.
At Atomic AI, I developed models that translate billions of tokens of experimental data into state-of-the-art RNA structure and function predictions. Previously, as CTO of XGenomes, I worked on a fundamentally new approach to DNA sequencing using super-resolution microscopy.
In my PhD at Berkeley (with Ben Recht and Michael Jordan) and brief postdoc at the Broad Institute (with Aviv Regev) I built optimization algorithms and the best algorithms for high-density super-resolution microscopy.
ATOM-1: A Foundation Model for RNA Structure and Function Built on Chemical Mapping Data, bioRxiv, 2023.
Sequencing by Emergence: Modeling and Estimation, arXiv, 2021.
Sets as Measures: Optimization and Machine Learning, UC Berkeley, 2018.
DeepLoco: Fast 3D Localization Microscopy Using Neural Networks, bioRxiv, 2018.
Saturating Splines and Feature Selection, JMLR, 2018.
The Alternating Descent Conditional Gradient Method for Sparse Inverse Problems, SIAM Journal on Optimization, 2017.
Streaming Variational Bayes, NeurIPS, 2013.